PUBLICATIONS
Arc mediates intercellular synaptic plasticity via IRSp53-dependent extracellular vesicle biogenesis
Ravens A*, Sullivan K*, Einstein J, Keceli SK, Kicmal T, Tyagi M, Hantak M, Shepherd T, Stewart A, Lyon K, Dharan A, Gallagher T, Campbell E, and Shepherd JD (2024) bioRxiv.
*Equal contribution
PNMA2 forms immunogenic non-enveloped virus-like capsids associated with paraneoplastic neurological syndrome
Xu J, Erlendsson S, Singh M, Regier M, Ibiricu I, Day GS, Piquet AL, Clardy SL, Feschotte C, Briggs JA, and Shepherd JD (2024) Cell 187, 831–845
Implementation and testing of a biohybrid transition microelectrode array for neural recording and modulation
Benozir A, Binder S, Boroomand S, Strathman HJ, Hantak M, Shepherd T, Ehrenhofer A, Zhang H, Shepherd JD, Solzbacher F, Tresco PA, Blair S, Reiche CF, and Fan Y ( 2023). bioRxiv.
Arc regulates a second-guessing cognitive bias during naturalistic foraging through effects on discrete behavior modules
Ravens A, Stacher-Hörndli CN, Emery J, Steinwand S, Shepherd JD, and Gregg C (2023). iScience 26(5):106761
Regulation of Blos1 by IRE1 prevents the accumulation of Huntingtin protein aggregates
Donghwi B, Jones RE, Piscopo KM, Tyagi M, Shepherd JD, and Hollien J. (2022). Molecular Biology of the Cell 33 (13): ar125
Scan-less machine-learning-enabled incoherent microscopy for minimally-invasive deep-brain imaging
Guo R, Nelson S, Regier M, Davis MW, Jorgensen EM, Shepherd JD, and Menon R (2022) Optics Express 30 (2): 1546–54.
Intercellular Arc signaling regulates vasodilation
de la Peña JB, Barragan-Iglesias P, Lou TF, Kunder N, Loerch S, Shukla T, Basavarajappa L, Song J, James DN, Megat S, Moy JK, Wanghzou A, Ray PR, Hoyt K, Steward O, Price TJ, Shepherd JD, Campbell ZT (2021). Journal of Neuroscience, 41(37):7712-7726.
The immediate early gene Arc is not required for hippocampal long-term potentiation
Kyrke-Smith M, Volk LJ, Cooke SF, Bear MF, Huganir RL, Shepherd JD (2021). Journal of Neuroscience, 41(19):4202-4211.
Computational cannula microscopy of neurons using neural networks
Guo R, Pan Z, Taibi A, Shepherd JD, Menon R (2020). Optics Letters, 45:2111-2114.
Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression
Beagan JA, Pastuzyn ED, Fernandez LR, Guo MH, Feng K, Titus KR, Chandrashekar H, Shepherd JD, Phillips-Cremins JE (2020). Nature Neuroscience, 23:707-717.
Expanding the AtLAS of non-coding RNA functions in the brain
Regier MJ, Shepherd JD (2020). Cell Research, 30:283-284.
Experience-dependent development and maintenance of binocular neurons in the mouse visual cortex
Jenks K, Shepherd JD (2020). Cell Reports, 30(6):1982-1994.e4.
Structures of virus-like capsids formed by the Drosophila neuronal Arc proteins
Erlendsson S, Morado DR, Cullen HB, Feschotte C, Shepherd JD, Briggs, JAG (2020). Nature Neuroscience, 23:172–175.
Intercellular communication in the nervous system goes viral
Hantak MP, Einstein J, Kearns RB, Shepherd JD (2020). Trends in Neurosciences, 44(4): 248–259.
The microbiota protects from viralinduced neurologic damage through microglia-intrinsic TLR signaling
Brown DG, Soto R, Yandamuri S, Stone C, Dickey L, Gomes-Neto JC, Pastuzyn ED, Bell R, Petersen C, Buhrke K, Fujinami RS, O’Connell RM, Stephens WZ, Shepherd JD, Lane TE and Round JL (2019). eLife, 8:e47117
Interneuron simplification and loss of structural plasticity as markers of aging-related functional decline
Eavri R, Shepherd JD, Welsh C, Flanders G, Bear M, Nedivi E (2018). Journal of Neuroscience, 38:8421-8432.
The temporal dynamics of Arc expression regulate cognitive flexibility
Wall M, Collins D, Chery S, Allen Z, Pastuzyn ED, George A, Nikolova V, Moy S, Philpot B, Shepherd JD, Müller J, Ehlers M, Mabb A, Corrêa S (2018). Neuron, 6:124-1132.e7.
Arc - an endogenous neuronal retrovirus?
Shepherd JD (2018). Seminars in Cell & Developmental Biology, 77:73-78.
The neuronal gene Arc encodes a repurposed retrotransposon gag protein that mediates intercellular RNA transfer
Pastuzyn ED, Day CE, Kearns RB, Kyrke-Smith M, Taibi AV, McCormick J, Yoder N, Belnap DM, Erlendsson S, Morado DR, Briggs JAG, Feschotte C, Shepherd JD (2018). Cell, 172:1-2.